Students

BIOL247 – Systems Physiology

2014 – S2 Day

General Information

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Unit convenor and teaching staff Unit convenor and teaching staff Other Staff
Katherine McClellan
Contact via katherine.mcclellan@mq.edu.au
Unit Convenor
Julia Raftos
Contact via julia.raftos@mq.edu.au
E8A 207
contact academic
Tutor
Alice Ding
Contact via email
Tutor
Wander Godinho
Contact via email
Scientific Officer
Monika King
Contact via email
Tutor
sheng Le
Contact via email
Tutor
Jin Quek
Contact via email
Senior Tutor
Darko Spirovski
Contact via email
Tutor
Elisabeth Tran
Contact via email
lecturer
Benjamin Wyse
Contact via email
Credit points Credit points
3
Prerequisites Prerequisites
6cp(P) from ((BBE101 and BIOL108 and BIOL114 and BIOL115 and (PSY104 or PSYC104) and (PSY105 or PSYC105) and HLTH108 and HLTH109))
Corequisites Corequisites
Co-badged status Co-badged status
Unit description Unit description
This unit considers the maintenance of body homeostasis. We investigate the cardiovascular system including an examination of the electrical and mechanical functions of the heart, its interaction with the blood vessels, and the hormones and the autonomic nervous system that control heart function. Next we study the role of the renal system in the control of the chemical composition of the body, water balance and body fluid volume. An overview of the respiratory and gastrointestinal systems will follow. Practical classes involve measuring physiological parameters such as blood pressure and electrical conduction through the heart (the ECG) in humans.

Important Academic Dates

Information about important academic dates including deadlines for withdrawing from units are available at https://www.mq.edu.au/study/calendar-of-dates

Learning Outcomes

On successful completion of this unit, you will be able to:

  • Explain how the cardiovascular, renal and respiratory systems contribute to the maintenance of homeostasis
  • Identify specific structural features of organ systems and explain how they underlie essential functions
  • Use equations describing physical, chemical and electrical principles to predict and interpret important physiological processes
  • Identify situations in which the integrated function of several organ systems interact to produce a coordinated response
  • Prepare written presentations based on evaluation of current scientific literature on topical issues in physiology
  • Carry out experiments using human subjects safely following protocols sanctioned by the Macquarie University Human Ethics Committee
  • Collect experimental data accurately and analyse, graph and apply statistical methods to allow interpretation of the results

Assessment Tasks

Name Weighting Due
Essay 15% TBA
Mini-test 5% TBA
Mid-semester test 10% TBA
Practical Assessments 10% TBA
Final exam 60% Exam Period

Essay

Due: TBA
Weighting: 15%

The essay must be written in your own words and marks will be deducted for any plagiarism. The essay must be submitted electronically through Tunitin which is available on iLearn. the essay Will be of 1,000 words (excluding the references) and the topic will be chosen from the list below. For references, I suggest you start with a text book or review article (secondary literature) to give you an overview of the field then you can move to experimental papers (primary literature). For your essay I would expect you to cite about 6-10 recent articles from books or refereed scientific journals. Postings on Web sites may only be used if they come from a reputable source (e.g., Heart Foundation, National Health and Medical Research Council).

The essay is due before the mid-semester break so I suggest you start on it immediately. If you are having any problems with the essay please talk to your tutors. They are always available in the practical classes.

Remember that in answering the questions posed in each topic you must concentrate on physiological concepts. 

Writing the essay

The first step is to choose a topic that interests you. This may involve selecting a few possible topics from the list on pg 11 and doing some preliminary reading.

The next step is to interpret the essay topic so that you understand exactly the questions to answer. We will use an essay about the drug Vioxx as an example.

The drug Vioxx was a very widely used anti-inflammatory drug until it was removed from the market when it was shown to increase the risk of heart attack. Explain why Vioxx was developed and the proposed mechanism of its deleterious effects on the cardiovascular system.

To search the literature for information relevant to the topic I usually use the databases “pubmed” or Science Direct (or both) and in many instances you will be able to download relevant articles from these sites.

From the available journal articles select 10 or 12 that appear to be most relevant and read through them to develop an overview of the topic and then select around 6-10 articles that are most pertinent.

Some of these articles will be reviews (secondary literature) and some should be reports of experimental studies (primary literature). In the case of Vioxx, reports of clinical trials would be important primary literature.

Read these articles carefully and make notes in your own words of their content.

You should then set out a preliminary plan using section headings (subheadings). The plan should organise the information into a coherent, logical sequence (telling the story). For the Vioxx essay it may look like this

Introduction

  • Purpose of anti-inflammatory drugs
  • Vioxx usage around the world
  • (don’t need state the contents of your essay because you only have 1000 words)

Body

  • COX1 and COX2 inhibitors
  • gastrointestinal damage
  • COX2 selective inhibitors designed to reduce gastrointestinal effect
  • Clinical trial identifies cardiovascular risks
  • Effect of Vioxx on the cardiovascular system

Conclusion

  • Inherent risks with systemic drugs

 

Check over your subheadings to make sure that you are answering the questions posed in the title. Using your notes complete each of your sections. Your purpose here is to interpret the data and explain it in simple, clear English. When you have trouble expressing a concept it is often because you don’t really understand it yourself. 

If a diagram will help the reader’s understanding include it. 

Once you have completed your first draft, read it through carefully and be prepared to make major changes if necessary. I suggest you read it through to a friend to see if it makes sense to them.

Editing the draft is best done on a hard copy, not the screen and you should check the relevance of the material you have included and the coherence and logic of each paragraph and the essay as a whole. All the time you should be considering whether you have answered the questions posed in the topic. Check the spelling and grammar. Try and keep the sentences short, remove technical jargon where possible and choose familiar, simple words rather than long, complicated or unusual ones.

Citing and the reference list

The source of all statements and diagrams obtained from the literature must be cited. The reference list only contains the articles that you have actually cited in the essay. Citations and the reference list must  be in Harvard Style. For more information go to

www.bio.mq.edu.au/files/Harvard%20Referencing%20System%202012(5).pdf

Layout

Please type the essay in 12pt, double spaced and with a 4-5 cm left hand margin and don’t forget to keep a copy for yourself.

Submission

All students must  submit  their essays to Turnitin. There is a link to Turnitin under assessment in iLearn for BIOL247.

Requests for extensions should be made to Julia Raftos. Extensions will be considered on an individual basis.
 

Essay Topics

  1. Barker’s hypothesis states that low birth weight babies have an increased risk of developing diabetes mellitus, hypertension and heart disease in the future. What evidence led to the formulation of this hypothesis and through what mechanism(s) is it thought to occur.
  1. The development of atherosclerosis is considered a critical risk factor in coronary heart disease. Review the risk factors (such as hypertension, abnormal blood lipids, smoking) and proposed mechanisms of atheroma development.
  1. ACE inhibitors and angiotensin II receptor blockers are two of the newer anti-hypertension drugs. Compare and contrast their mechanisms of action, their beneficial effects and their side effects.
  1. Neonatal respiratory distress syndrome is due partially to the lack of surfactant in the lungs of preterm babies. Explain how surfactant works and current and future treatment of this syndrome.
  1. The aquaporin water channel was only identified recently. Review how it was discovered, its structures and its role in the disease diabetes insipidus.
  1. Statins are used to treat patients with coronary heart disease. How do statins work and why are they considered so beneficial for people with heart disease.
  1. What are the proposed benefits of ensuring that most of the carbohydrates in the diet have a low glycemic index?

 


On successful completion you will be able to:
  • Prepare written presentations based on evaluation of current scientific literature on topical issues in physiology

Mini-test

Due: TBA
Weighting: 5%

Mini-test on first 6 lectures and the first two pracs. For this test there will be 20 multiple choice questions and the test will be held in your usual practical session.


On successful completion you will be able to:
  • Explain how the cardiovascular, renal and respiratory systems contribute to the maintenance of homeostasis
  • Identify specific structural features of organ systems and explain how they underlie essential functions
  • Use equations describing physical, chemical and electrical principles to predict and interpret important physiological processes

Mid-semester test

Due: TBA
Weighting: 10%

This test will include 30 multiple choice questions to be completed in 40 minutes. All the cardiovascular section (lectures 1-12) and the areas covered in the first two practical classes will be examined.


On successful completion you will be able to:
  • Explain how the cardiovascular, renal and respiratory systems contribute to the maintenance of homeostasis
  • Identify specific structural features of organ systems and explain how they underlie essential functions
  • Use equations describing physical, chemical and electrical principles to predict and interpret important physiological processes
  • Identify situations in which the integrated function of several organ systems interact to produce a coordinated response

Practical Assessments

Due: TBA
Weighting: 10%

There are two assignments that are linked to the practical classes. The questions are included in your practical manual. These assignments should be completed and handed in to your tutor during your practical class.

No. Test Weight Due Date for external students 1 Questions on the effect of posture on BP and heart rate 5% TBA 2 Digestion questions 5% TBA

On successful completion you will be able to:
  • Explain how the cardiovascular, renal and respiratory systems contribute to the maintenance of homeostasis
  • Identify specific structural features of organ systems and explain how they underlie essential functions
  • Use equations describing physical, chemical and electrical principles to predict and interpret important physiological processes
  • Identify situations in which the integrated function of several organ systems interact to produce a coordinated response
  • Carry out experiments using human subjects safely following protocols sanctioned by the Macquarie University Human Ethics Committee
  • Collect experimental data accurately and analyse, graph and apply statistical methods to allow interpretation of the results

Final exam

Due: Exam Period
Weighting: 60%

The exam is a three hour paper 33% of the marks will be for multiple choice questions, and the rest from short answer questions (a paragraph or dot points or a diagram).There will be some choice for the short answer questions.


On successful completion you will be able to:
  • Explain how the cardiovascular, renal and respiratory systems contribute to the maintenance of homeostasis
  • Identify specific structural features of organ systems and explain how they underlie essential functions
  • Use equations describing physical, chemical and electrical principles to predict and interpret important physiological processes
  • Identify situations in which the integrated function of several organ systems interact to produce a coordinated response

Delivery and Resources

CLASSES

There will be two lectures each week and one practical class or tutorial session. Lectures are at 12 pm on Mondays in The P.G. Price Theatre and 5 pm on Wednesdays in the Mason Theatre. Pracs are at 2pm on Tuesdays and 10 am and 2 pm on Wednesday in F7B 102, 105 and 110.

Practical sessions for external students will be held on Saturday 30 & Sunday 31 August and on Thursday and Friday the 25 & 26 of September.

REQUIRED AND RECOMMENDED TEXTS AND/OR MATERIALS

A practical manual and book of lecture graphics for Biol 247 are available in the Co-op Bookshop. The textbook for this unit is Principals of Human Physiology” 4th edition by Cindy L Stanfield, published in 2011 by Pearson. Other physiological texts of a similar standard may also be suitable.

UNIT WEBPAGE AND TECHNOLOGY USED AND REQUIRED

 

Students are expected to have access to a computer with online facilities, an attached printer, with software including Adobe reader, Microsoft Office Word, Powerpoint and Excel.

 Your iLearn site will contain the Unit Outline, Lecture Graphics, the text of the lectures, a link to ECHO 360 (previously known as iLectures), practical notes, an announcements area, and other information to help you complete the unit. Later, practice tests and assignment marks will be added. Please check this site regularly.

Unit Schedule

Lecture Timetable 2014

Week

Lecture

1

1. Overview of the cardiovascular system

2. Electrical activity of the heart

2

3. Generation of the heartbeat

4. Regulation of contraction of cardiac muscle

3

5. Physics of  the circulation

6. Components of the circulation and their specific functions

4

7. Function of the microcirculation/Control of blood flow

8. Regulation of cardiac output

5

9. Short term regulation of the arterial blood pressure

10. Structure and function of the renal system

6

11. Production of urine by the nephron

12. Excretion as the outcome of filtration, reabsorption and secretion

7

13. Water balance: The control of ECF osmolarity

14. Sodium balance : The control of the ECF volume and blood pressure

                Study break:  22/9/14 – 3/10/14

8

Labour Day public holiday

15. Structure and function of the respiratory system

9

16. The process of breathing

17. Alveolar ventilation and perfusion

10

18. Gas exchange and the carriage of O2 and CO2  in the blood

19. Control of respiration

11

20. Nutrition

21. Function and organisation of the gastrointestinal system

12

22. Motility of the gastrointestinal system

23. Secretion in the gastrointestinal system

13

24. Digestion and absorption of food

no lecture

 

 

Internal Practical Timetable 2014

W

Practical Group A

Practical Group B & C

1

For students who have not completed BIOL257; Tutorial on resting and acting potentials, nerves, muscles and the autonomic nervous system

2

The electrocardiogram (ECG) and human cardiovascular function

Introductory tutorial and the Langendorff perfused heart video and questions

3

Introductory tutorial and the Langendorff perfused heart video and questions

The electrocardiogram (ECG) and human cardiovascular function

4

Mini MCQ test on first 6 lectures

Cardiovascular system and the effect of posture on heart rate and blood pressure

5

Analysis of blood pressure control during postural changes

6

Permeability, osmolarity and tonicity (lab coats)

7

Mid-semester test; MCQ test on cardiovascular and renal systems (L1-12)

Study break:  22/9/14 – 3/10/14

 

8

 

Review of test and Body compartments tutorial questions

9

Nutrition prac (food diaries)

Digestion prac (lab coats)

10

 

Digestion prac (lab coats)

Nutrition prac (food diaries)

11

PhysioEx interactive laboratory “Renal System Physiology” and Tutorial questions on renal function

12

Revision tutorial based on 2013 exam paper (Externals welcome)

13

No Prac

 

Attendance and participation in practical sessions is compulsory and assessable.

Please note that in order to pass this unit, all assessment tasks must be completed and you must pass the final exam.

 

Policies and Procedures

Macquarie University policies and procedures are accessible from Policy Central. Students should be aware of the following policies in particular with regard to Learning and Teaching:

Academic Honesty Policy http://mq.edu.au/policy/docs/academic_honesty/policy.html

Assessment Policy  http://mq.edu.au/policy/docs/assessment/policy.html

Grading Policy http://mq.edu.au/policy/docs/grading/policy.html

Grade Appeal Policy http://mq.edu.au/policy/docs/gradeappeal/policy.html

Grievance Management Policy http://mq.edu.au/policy/docs/grievance_management/policy.html

Disruption to Studies Policy http://www.mq.edu.au/policy/docs/disruption_studies/policy.html The Disruption to Studies Policy is effective from March 3 2014 and replaces the Special Consideration Policy.

In addition, a number of other policies can be found in the Learning and Teaching Category of Policy Central.

Student Code of Conduct

Macquarie University students have a responsibility to be familiar with the Student Code of Conduct: https://students.mq.edu.au/support/student_conduct/

Student Support

Macquarie University provides a range of support services for students. For details, visit http://students.mq.edu.au/support/

Learning Skills

Learning Skills (mq.edu.au/learningskills) provides academic writing resources and study strategies to improve your marks and take control of your study.

Student Services and Support

Students with a disability are encouraged to contact the Disability Service who can provide appropriate help with any issues that arise during their studies.

Student Enquiries

For all student enquiries, visit Student Connect at ask.mq.edu.au

IT Help

For help with University computer systems and technology, visit http://informatics.mq.edu.au/help/

When using the University's IT, you must adhere to the Acceptable Use Policy. The policy applies to all who connect to the MQ network including students.

Graduate Capabilities

Capable of Professional and Personal Judgement and Initiative

We want our graduates to have emotional intelligence and sound interpersonal skills and to demonstrate discernment and common sense in their professional and personal judgement. They will exercise initiative as needed. They will be capable of risk assessment, and be able to handle ambiguity and complexity, enabling them to be adaptable in diverse and changing environments.

This graduate capability is supported by:

Learning outcomes

  • Carry out experiments using human subjects safely following protocols sanctioned by the Macquarie University Human Ethics Committee
  • Collect experimental data accurately and analyse, graph and apply statistical methods to allow interpretation of the results

Assessment tasks

  • Essay
  • Practical Assessments
  • Final exam

Commitment to Continuous Learning

Our graduates will have enquiring minds and a literate curiosity which will lead them to pursue knowledge for its own sake. They will continue to pursue learning in their careers and as they participate in the world. They will be capable of reflecting on their experiences and relationships with others and the environment, learning from them, and growing - personally, professionally and socially.

This graduate capability is supported by:

Assessment task

  • Essay

Discipline Specific Knowledge and Skills

Our graduates will take with them the intellectual development, depth and breadth of knowledge, scholarly understanding, and specific subject content in their chosen fields to make them competent and confident in their subject or profession. They will be able to demonstrate, where relevant, professional technical competence and meet professional standards. They will be able to articulate the structure of knowledge of their discipline, be able to adapt discipline-specific knowledge to novel situations, and be able to contribute from their discipline to inter-disciplinary solutions to problems.

This graduate capability is supported by:

Learning outcomes

  • Explain how the cardiovascular, renal and respiratory systems contribute to the maintenance of homeostasis
  • Identify specific structural features of organ systems and explain how they underlie essential functions
  • Use equations describing physical, chemical and electrical principles to predict and interpret important physiological processes
  • Identify situations in which the integrated function of several organ systems interact to produce a coordinated response
  • Carry out experiments using human subjects safely following protocols sanctioned by the Macquarie University Human Ethics Committee

Assessment tasks

  • Essay
  • Mini-test
  • Mid-semester test
  • Practical Assessments
  • Final exam

Critical, Analytical and Integrative Thinking

We want our graduates to be capable of reasoning, questioning and analysing, and to integrate and synthesise learning and knowledge from a range of sources and environments; to be able to critique constraints, assumptions and limitations; to be able to think independently and systemically in relation to scholarly activity, in the workplace, and in the world. We want them to have a level of scientific and information technology literacy.

This graduate capability is supported by:

Learning outcomes

  • Use equations describing physical, chemical and electrical principles to predict and interpret important physiological processes
  • Identify situations in which the integrated function of several organ systems interact to produce a coordinated response
  • Prepare written presentations based on evaluation of current scientific literature on topical issues in physiology
  • Collect experimental data accurately and analyse, graph and apply statistical methods to allow interpretation of the results

Assessment tasks

  • Essay
  • Mini-test
  • Mid-semester test
  • Practical Assessments
  • Final exam

Problem Solving and Research Capability

Our graduates should be capable of researching; of analysing, and interpreting and assessing data and information in various forms; of drawing connections across fields of knowledge; and they should be able to relate their knowledge to complex situations at work or in the world, in order to diagnose and solve problems. We want them to have the confidence to take the initiative in doing so, within an awareness of their own limitations.

This graduate capability is supported by:

Learning outcomes

  • Use equations describing physical, chemical and electrical principles to predict and interpret important physiological processes
  • Identify situations in which the integrated function of several organ systems interact to produce a coordinated response
  • Collect experimental data accurately and analyse, graph and apply statistical methods to allow interpretation of the results

Assessment tasks

  • Essay
  • Mini-test
  • Mid-semester test
  • Practical Assessments
  • Final exam

Creative and Innovative

Our graduates will also be capable of creative thinking and of creating knowledge. They will be imaginative and open to experience and capable of innovation at work and in the community. We want them to be engaged in applying their critical, creative thinking.

This graduate capability is supported by:

Learning outcome

  • Prepare written presentations based on evaluation of current scientific literature on topical issues in physiology

Assessment tasks

  • Essay
  • Mid-semester test
  • Practical Assessments
  • Final exam

Effective Communication

We want to develop in our students the ability to communicate and convey their views in forms effective with different audiences. We want our graduates to take with them the capability to read, listen, question, gather and evaluate information resources in a variety of formats, assess, write clearly, speak effectively, and to use visual communication and communication technologies as appropriate.

This graduate capability is supported by:

Learning outcomes

  • Prepare written presentations based on evaluation of current scientific literature on topical issues in physiology
  • Carry out experiments using human subjects safely following protocols sanctioned by the Macquarie University Human Ethics Committee
  • Collect experimental data accurately and analyse, graph and apply statistical methods to allow interpretation of the results

Assessment tasks

  • Essay
  • Practical Assessments
  • Final exam

Changes since First Published

Date Description
01/08/2014 Class times and external dates have been updated