Students

FOSE1025 – Scientific Computing

2023 – Session 1, Online-scheduled-weekday

General Information

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Unit convenor and teaching staff Unit convenor and teaching staff Convenor, Lecturer
Diego Molla-Aliod
diego.molla-aliod@mq.edu.au
Contact via 02 9850 9531
4 Research Park Drive 358
By appointment
Lecturer
Charanya Ramakrishnan
charanya.ramakrishnan@mq.edu.au
Contact via 02 9850 6347
4 Research Park Drive 364
By appointment
Tutor
Munazza Zaib
munazza-zaib@mq.edu.au
Tutor
Neil Ian Quisumbing
neilian.quisumbing@mq.edu.au
Tutor
Laya Jose
laya.jose@mq.edu.au
Tutor
Nasrin Shabani
nasrin.shabani@mq.edu.au
Credit points Credit points
10
Prerequisites Prerequisites
Corequisites Corequisites
Co-badged status Co-badged status
FOSX1025
Unit description Unit description

This unit introduces essential concepts and techniques of computing for conducting science, with special emphasis on the preparation and manipulation of data. We discuss the role of computers and computing tools in science and focus on the use of spreadsheets and other data manipulation tools. This unit introduces vital skills for tertiary learning and explores their relationship to success in future careers.

Important Academic Dates

Information about important academic dates including deadlines for withdrawing from units are available at https://www.mq.edu.au/study/calendar-of-dates

Learning Outcomes

On successful completion of this unit, you will be able to:

  • ULO1: Demonstrate foundational knowledge of the role of data, computing and computing tools for science.
  • ULO2: Determine the appropriate computing tool for the key stages of data manipulation.
  • ULO3: Prepare and clean data so that it can be processed by computer tools.
  • ULO4: Communicate the steps performed in the preparation and processing of data so that they can be reproduced.
  • ULO5: Explain the ethical implications of the use of computers for gathering, processing, and storing data.
  • ULO6: Demonstrate foundational employability and self-directed learning skills, including recording academic achievements to link university study to future careers.

General Assessment Information

This unit does not have a final exam. Instead, there will be in-class tests at the weeks listed in the table above.

Each of the foundation activities is a hurdle without an assessment weight. This means that these activities are not graded but you must complete all of them as outlined in order to pass this unit. This unit has been designed so that 20% of student workload is allocated to these activities. Some activities will be automatically graded, but all will ask you to apply the modules to your work in this unit, general university studies and your personal goals. You will be informed of any due dates, but most modules can be completed in your own time.  See your iLearn unit for detailed information on how to complete these modules.

There will be 3 in-class tests at the weeks as specified in the assessment tasks table. These tests will take place during the time of the SGTA sessions of the corresponding week.

The project and portfolio is based on an individual project where you will apply some of the skills learnt during the unit on a practical problem.

The reproducibility project is a two-phase project where you will write a report (phase 1) and then you will assess the reproducibility of someone else's report (phase 2).

Late Assessment Submission Penalty

Unless a Special Consideration request has been submitted and approved, a 5% penalty (of the total possible mark) will be applied each day a written assessment is not submitted, up until the 7th day (including weekends). After the 7th day, a grade of '0' will be awarded even if the assessment is submitted. Submission time for all uploaded assessments is 11:55 pm. A 1-hour grace period is provided to students who experience a technical concern.

For any late submission of time-sensitive tasks, such as scheduled tests/exams, performance assessments/presentations, and/or scheduled practical assessments/labs, please apply for Special Consideration.

Assessments where Late Submissions will be accepted

  • Foundation activities - YES, there is no Late Penalty
  • In-class tests - NO, unless Special Consideration is granted
  • Project - YES, Standard Late Penalty applies
  • Reproducibility project, phase 1 - YES, Standard Late Penalty applies
  • Reproducibility project, phase 2 - NO, unless Special Consideration is granted

Special Consideration

The Special Consideration Policy aims to support students who have been impacted by short-term circumstances or events that are serious, unavoidable and significantly disruptive, and which may affect their performance in assessment. If you experience circumstances or events that affect your ability to complete the assessments in this unit on time, please inform the convenor and submit a Special Consideration request through ask.mq.edu.au.  

Assessment Tasks

Name Weighting Hurdle Due
Foundation activities 0% Yes Weeks 2, 3, 4, 5, 6, 8
In-class tests 60% No Weeks 3, 6, 12
Project 30% No Week 11
Reproducibility Project 10% No Weeks 12, 13

Foundation activities

Assessment Type 1: Quiz/Test
Indicative Time on Task 2: 0 hours
Due: Weeks 2, 3, 4, 5, 6, 8
Weighting: 0%
This is a hurdle assessment task (see assessment policy for more information on hurdle assessment tasks)

 

Activities related to foundational employability and self-directed learning skills

 
On successful completion you will be able to:
  • Demonstrate foundational employability and self-directed learning skills, including recording academic achievements to link university study to future careers.

In-class tests

Assessment Type 1: Quiz/Test
Indicative Time on Task 2: 20 hours
Due: Weeks 3, 6, 12
Weighting: 60%

 

One in-class test for each principal module of the unit.

 
On successful completion you will be able to:
  • Demonstrate foundational knowledge of the role of data, computing and computing tools for science.
  • Determine the appropriate computing tool for the key stages of data manipulation.
  • Prepare and clean data so that it can be processed by computer tools.
  • Communicate the steps performed in the preparation and processing of data so that they can be reproduced.
  • Explain the ethical implications of the use of computers for gathering, processing, and storing data.
  • Demonstrate foundational employability and self-directed learning skills, including recording academic achievements to link university study to future careers.

Project

Assessment Type 1: Project
Indicative Time on Task 2: 50 hours
Due: Week 11
Weighting: 30%

 

Development of a project in several stages: 1. data preparation, 2. processing, 3. presentation

 
On successful completion you will be able to:
  • Demonstrate foundational knowledge of the role of data, computing and computing tools for science.
  • Determine the appropriate computing tool for the key stages of data manipulation.
  • Prepare and clean data so that it can be processed by computer tools.
  • Communicate the steps performed in the preparation and processing of data so that they can be reproduced.
  • Demonstrate foundational employability and self-directed learning skills, including recording academic achievements to link university study to future careers.

Reproducibility Project

Assessment Type 1: Project
Indicative Time on Task 2: 15 hours
Due: Weeks 12, 13
Weighting: 10%

 

Peer assessment of the reproducibility of a project

 
On successful completion you will be able to:
  • Determine the appropriate computing tool for the key stages of data manipulation.
  • Communicate the steps performed in the preparation and processing of data so that they can be reproduced.
  • Demonstrate foundational employability and self-directed learning skills, including recording academic achievements to link university study to future careers.

1 If you need help with your assignment, please contact:

  • the academic teaching staff in your unit for guidance in understanding or completing this type of assessment
  • the Writing Centre for academic skills support.

2 Indicative time-on-task is an estimate of the time required for completion of the assessment task and is subject to individual variation

Delivery and Resources

During most of the weeks, there will be 2 hours of lectures and 2 hours of Small Group Teaching Activities (SGTA). In all SGTA activities that occur in a face to face class, all the required software will be installed in the computers but you are free to bring your own device and install the software.

There are no lectures from week 11, and no lecture-related SGTA sessions from week 12. Instead, from week 11 there will be other activities related to improving your employability skills. These activities will be detailed in iLearn.

Delivery Modes

Delivery modes depend on the type of offering and are detailed below.

Offering Lectures SGTA
FOSE1025 in person In person In person
FOSE1025 online online

online
FOSX1025 online no classes
  • Lectures will be delivered in person or online, depending on the type of offering. Students enrolled in the online offering are welcome to attend the in person class. All lecture sessions will be recorded and made available via iLearn after the session.
  • SGTA sessions will be delivered in person or online, depending on the type of the offering during the entire semester. Please check the timetable for the specific times and types of sessions.
  • All assessment will be online.

The online delivery of lectures will be via echo360. This is a module available in iLearn.

The online delivery of SGTA will be via Macquarie University's Zoom web conferencing system (https://macquarie.zoom.us/). You will be able to login using your Macquarie OneID.

Any changes to this plan will be announced in iLearn.

Software

The unit will use the following software:

Textbooks and Reading

This unit does not have a textbook. Each week we will assign reading material and videos. These will be made available via iLearn.

Unit Schedule

The following weekly schedule is tentative:

  1. Computing in Science
  2. Basic concepts of computing
  3. Data types and data frames
  4. Data exploration
  5. Storing data
  6. Scripts and MATLAB
  7. Cleaning data
  8. Transforming data
  9. Summarising and analysing data
  10. Ethics and reproducibility
  11. Foundational skills (I)
  12. Foundational skills (II)
  13. Foundational skills (III)

Policies and Procedures

Macquarie University policies and procedures are accessible from Policy Central (https://policies.mq.edu.au). Students should be aware of the following policies in particular with regard to Learning and Teaching:

Students seeking more policy resources can visit Student Policies (https://students.mq.edu.au/support/study/policies). It is your one-stop-shop for the key policies you need to know about throughout your undergraduate student journey.

To find other policies relating to Teaching and Learning, visit Policy Central (https://policies.mq.edu.au) and use the search tool.

Student Code of Conduct

Macquarie University students have a responsibility to be familiar with the Student Code of Conduct: https://students.mq.edu.au/admin/other-resources/student-conduct

Results

Results published on platform other than eStudent, (eg. iLearn, Coursera etc.) or released directly by your Unit Convenor, are not confirmed as they are subject to final approval by the University. Once approved, final results will be sent to your student email address and will be made available in eStudent. For more information visit ask.mq.edu.au or if you are a Global MBA student contact globalmba.support@mq.edu.au

Academic Integrity

At Macquarie, we believe academic integrity – honesty, respect, trust, responsibility, fairness and courage – is at the core of learning, teaching and research. We recognise that meeting the expectations required to complete your assessments can be challenging. So, we offer you a range of resources and services to help you reach your potential, including free online writing and maths support, academic skills development and wellbeing consultations.

Student Support

Macquarie University provides a range of support services for students. For details, visit http://students.mq.edu.au/support/

The Writing Centre

The Writing Centre provides resources to develop your English language proficiency, academic writing, and communication skills.

The Library provides online and face to face support to help you find and use relevant information resources. 

Student Services and Support

Macquarie University offers a range of Student Support Services including:

Student Enquiries

Got a question? Ask us via AskMQ, or contact Service Connect.

IT Help

For help with University computer systems and technology, visit http://www.mq.edu.au/about_us/offices_and_units/information_technology/help/. 

When using the University's IT, you must adhere to the Acceptable Use of IT Resources Policy. The policy applies to all who connect to the MQ network including students.

Changes from Previous Offering

Previous offerings had participation hurdles for the lectures and SGTA. These hurdles have been removed.

Assessment Standards

FOSE1025 will be assessed and graded according to the University assessment and grading policies.

The following general standards of achievement will be used to design and assess each of the assessment tasks with respect to the letter grades. 

Grade Range Description
HD 85-100 Provides consistent evidence of deep and critical understanding in relation to the learning outcomes. There is substantial originality, insight or creativity in identifying, generating and communicating competing arguments, perspectives or problem solving approaches; critical evaluation of problems, their solutions and their implications; creativity in application as appropriate to the course/program.
D 75-84 Provides evidence of integration and evaluation of critical ideas, principles and theories, distinctive insight and ability in applying relevant skills and concepts in relation to learning outcomes. There is demonstration of frequent originality or creativity in defining and analysing issues or problems and providing solutions; and the use of means of communication appropriate to the course/program and the audience.
CR 65-74 Provides evidence of learning that goes beyond replication of content knowledge or skills relevant to the learning outcomes. There is demonstration of substantial understanding of fundamental concepts in the field of study and the ability to apply these concepts in a variety of contexts; convincing argumentation with appropriate coherent justification; communication of ideas fluently and clearly in terms of the conventions of the course/program.
P 50-64 Provides sufficient evidence of the achievement of learning outcomes. There is demonstration of understanding and application of fundamental concepts of the course/program; routine argumentation with acceptable justification; communication of information and ideas adequately in terms of the conventions of the course/program. The learning attainment is considered satisfactory or adequate or competent or capable in relation to the specified outcomes.
F 0-49 Does not provide evidence of attainment of learning outcomes. There is missing or partial or superficial or faulty understanding and application of the fundamental concepts in the field of study; missing, undeveloped, inappropriate or confusing argumentation; incomplete, confusing or lacking communication of ideas in ways that give little attention to the conventions of the course/program.

Assessment Process

Automatic marking: Some of the assessed tasks will be marked automatically. When this is the case, in order to guarantee the above grading standards, some of the questions will require the standard of the level of D or HD.

Manual marking: For the assessed tasks that are not marked automatically, these assessment standards will be used to give a numeric mark to the assessment submission during marking, based on a rubric that will be available at the time of the release of the task.

Requirements to Pass this Unit

To pass this units you must:

  • Achieve a total mark equal to or greater than 50%, and
  • Successfully pass all Foundation Activity hurdles.

The final mark for the unit will be calculated by combining the marks for all assessment tasks according to the percentage weightings shown in the assessment summary. If the final mark is 50 or greater and not all assessment hurdles have passed, the final mark and grade will be 49 FH.

Unit information based on version 2023.03 of the Handbook